HL_9NJF_032

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

9NJF|1|R1|U|1325, 9NJF|1|R1|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_032 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.1458

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9NJF|1|R1|G|1324
9NJF|1|R1|U|1325
9NJF|1|R1|U|1326
9NJF|1|R1|A|1327
9NJF|1|R1|A|1328
9NJF|1|R1|U|1329
9NJF|1|R1|C|1330

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17

Chain 22

Large ribosomal subunit protein uL22