HL_9NJF_037

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CACUACGGUG

Length

10 nucleotides

Bulged bases

9NJF|1|R1|A|1535, 9NJF|1|R1|C|1536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R1|C|1531
9NJF|1|R1|A|1532
9NJF|1|R1|C|1533
9NJF|1|R1|U|1534
9NJF|1|R1|A|1535
9NJF|1|R1|C|1536
9NJF|1|R1|G|1537
9NJF|1|R1|G|1538
9NJF|1|R1|U|1539
9NJF|1|R1|G|1540

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23