HL_9NJF_039

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9NJF|1|R1|A|1614, 9NJF|1|R1|A|1616, 9NJF|1|R1|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_039 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0942

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9NJF|1|R1|C|1612
9NJF|1|R1|G|1613
9NJF|1|R1|A|1614
9NJF|1|R1|C|1615
9NJF|1|R1|A|1616
9NJF|1|R1|C|1617
9NJF|1|R1|A|1618
9NJF|1|R1|G|1619

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 22

Large ribosomal subunit protein uL22

Chain 34

50S ribosomal protein L34