HL_9NJF_042

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

9NJF|1|R1|U|1729, 9NJF|1|R1|C|1730, 9NJF|1|R1|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_042 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.3579

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

9NJF|1|R1|C|1727
9NJF|1|R1|C|1728
9NJF|1|R1|U|1729
9NJF|1|R1|C|1730
9NJF|1|R1|G|1731
9NJF|1|R1|C|1732
9NJF|1|R1|G|1733

Current chains

Chain R1

23S ribosomal RNA

Nearby chains