HL_9NJF_066

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

9NJF|1|R1|U|2797, 9NJF|1|R1|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_066 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.4567

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9NJF|1|R1|C|2795
9NJF|1|R1|U|2796
9NJF|1|R1|U|2797
9NJF|1|R1|U|2798
9NJF|1|R1|A|2799
9NJF|1|R1|A|2800
9NJF|1|R1|G|2801

Current chains

Chain R1

23S ribosomal RNA

Nearby chains