HL_9NJF_071

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUGAUCAUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_071 not in the Motif Atlas

Homologous match to HL_5J7L_001

Geometric discrepancy: 0.0926

The information below is about HL_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.5

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9NJF|1|R3|U|12
9NJF|1|R3|U|13
9NJF|1|R3|U|14
9NJF|1|R3|G|15
9NJF|1|R3|A|16
9NJF|1|R3|U|17
9NJF|1|R3|C|18
9NJF|1|R3|A|19
9NJF|1|R3|U|20
9NJF|1|R3|G|21
9NJF|1|R3|G|22

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain se

Small ribosomal subunit protein uS5

Chain sl

Small ribosomal subunit protein uS12