HL_9NJF_078

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_078 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0973

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9NJF|1|R3|A|320
9NJF|1|R3|A|321
9NJF|1|R3|C|322
9NJF|1|R3|U|323
9NJF|1|R3|G|324
9NJF|1|R3|A|325
9NJF|1|R3|G|326
9NJF|1|R3|A|327
9NJF|1|R3|C|328
9NJF|1|R3|A|329
9NJF|1|R3|C|330
9NJF|1|R3|G|331
9NJF|1|R3|G|332
9NJF|1|R3|U|333

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16

Chain st

30S ribosomal protein S20