HL_9NJF_081

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAGAAGGCCUUCGGGUUGUAAAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R3|U|409
9NJF|1|R3|G|410
9NJF|1|R3|A|411
9NJF|1|R3|A|412
9NJF|1|R3|G|413
9NJF|1|R3|A|414
9NJF|1|R3|A|415
9NJF|1|R3|G|416
9NJF|1|R3|G|417
9NJF|1|R3|C|418
9NJF|1|R3|C|419
9NJF|1|R3|U|420
9NJF|1|R3|U|421
9NJF|1|R3|C|422
9NJF|1|R3|G|423
9NJF|1|R3|G|424
9NJF|1|R3|G|425
9NJF|1|R3|U|426
9NJF|1|R3|U|427
9NJF|1|R3|G|428
9NJF|1|R3|U|429
9NJF|1|R3|A|430
9NJF|1|R3|A|431
9NJF|1|R3|A|432
9NJF|1|R3|G|433

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sc

Small ribosomal subunit protein uS3

Chain sd

30S ribosomal protein S4