HL_9NJF_082

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9NJF|1|R3|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3288

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9NJF|1|R3|G|462
9NJF|1|R3|U|463
9NJF|1|R3|U|464
9NJF|1|R3|A|465
9NJF|1|R3|A|466
9NJF|1|R3|U|467
9NJF|1|R3|A|468
9NJF|1|R3|C|469
9NJF|1|R3|C|470

Current chains

Chain R3

16S ribosomal RNA

Nearby chains