HL_9NJF_090

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_090 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.0941

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9NJF|1|R3|C|897
9NJF|1|R3|G|898
9NJF|1|R3|C|899
9NJF|1|R3|A|900
9NJF|1|R3|A|901
9NJF|1|R3|G|902

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain R1

Large subunit ribosomal RNA; LSU rRNA