HL_9NJF_096

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9NJF|1|R3|C|1136, 9NJF|1|R3|C|1137, 9NJF|1|R3|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_096 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3829

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

9NJF|1|R3|G|1134
9NJF|1|R3|U|1135
9NJF|1|R3|C|1136
9NJF|1|R3|C|1137
9NJF|1|R3|G|1138
9NJF|1|R3|G|1139
9NJF|1|R3|C|1140

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain si

Small ribosomal subunit protein uS9