HL_9NJF_100

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

9NJF|1|R3|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_100 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1794

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9NJF|1|R3|G|1356
9NJF|1|R3|A|1357
9NJF|1|R3|U|1358
9NJF|1|R3|C|1359
9NJF|1|R3|A|1360
9NJF|1|R3|G|1361
9NJF|1|R3|A|1362
9NJF|1|R3|A|1363
9NJF|1|R3|U|1364
9NJF|1|R3|G|1365
9NJF|1|R3|C|1366

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain si

Small ribosomal subunit protein uS9

Chain sj

30S ribosomal protein S10

Chain sn

Small ribosomal subunit protein uS14