HL_9NJF_101

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9NJF|1|R3|U|1451, 9NJF|1|R3|C|1452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_101 not in the Motif Atlas

Homologous match to HL_5J7L_030

Geometric discrepancy: 0.4504

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9NJF|1|R3|C|1449
9NJF|1|R3|U|1450
9NJF|1|R3|U|1451
9NJF|1|R3|C|1452
9NJF|1|R3|G|1453
9NJF|1|R3|G|1454

Current chains

Chain R3

16S ribosomal RNA

Nearby chains