HL_9NKL_005

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9NKL|1|R1|A|196, 9NKL|1|R1|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_005 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.1251

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9NKL|1|R1|G|194
9NKL|1|R1|A|195
9NKL|1|R1|A|196
9NKL|1|R1|A|197
9NKL|1|R1|C|198
9NKL|1|R1|A|199
9NKL|1|R1|U|200
9NKL|1|R1|C|201

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 28

50S ribosomal protein L28