HL_9NKL_008

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9NKL|1|R1|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_008 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1161

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

9NKL|1|R1|C|305
9NKL|1|R1|U|306
9NKL|1|R1|G|307
9NKL|1|R1|G|308
9NKL|1|R1|A|309
9NKL|1|R1|A|310
9NKL|1|R1|A|311
9NKL|1|R1|G|312

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24