HL_9NKL_016

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9NKL|1|R1|A|613, 9NKL|1|R1|A|614, 9NKL|1|R1|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_016 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3019

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

9NKL|1|R1|C|611
9NKL|1|R1|G|612
9NKL|1|R1|A|613
9NKL|1|R1|A|614
9NKL|1|R1|U|615
9NKL|1|R1|A|616
9NKL|1|R1|G|617

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein uL4