HL_9NKL_023

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAAGGGGGUCAUCCCGACUUACCAACC

Length

28 nucleotides

Bulged bases

9NKL|1|R1|U|887, 9NKL|1|R1|G|891, 9NKL|1|R1|C|897

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NKL|1|R1|G|875
9NKL|1|R1|C|876
9NKL|1|R1|A|877
9NKL|1|R1|A|878
9NKL|1|R1|G|879
9NKL|1|R1|G|880
9NKL|1|R1|G|881
9NKL|1|R1|G|882
9NKL|1|R1|G|883
9NKL|1|R1|U|884
9NKL|1|R1|C|885
9NKL|1|R1|A|886
9NKL|1|R1|U|887
9NKL|1|R1|C|888
9NKL|1|R1|C|889
9NKL|1|R1|C|890
9NKL|1|R1|G|891
9NKL|1|R1|A|892
9NKL|1|R1|C|893
9NKL|1|R1|U|894
9NKL|1|R1|U|895
9NKL|1|R1|A|896
9NKL|1|R1|C|897
9NKL|1|R1|C|898
9NKL|1|R1|A|899
9NKL|1|R1|A|900
9NKL|1|R1|C|901
9NKL|1|R1|C|902

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain sm

30S ribosomal protein S13