HL_9NKL_036

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9NKL|1|R1|A|1535, 9NKL|1|R1|C|1536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_036 not in the Motif Atlas

Geometric match to HL_8CRE_195

Geometric discrepancy: 0.3487

The information below is about HL_8CRE_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.3

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

9NKL|1|R1|C|1533
9NKL|1|R1|U|1534
9NKL|1|R1|A|1535
9NKL|1|R1|C|1536
9NKL|1|R1|G|1537
9NKL|1|R1|G|1538

Current chains

Chain R1

23S ribosomal RNA

Nearby chains