HL_9NKL_040

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9NKL|1|R1|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_040 not in the Motif Atlas

Homologous match to HL_7A0S_042

Geometric discrepancy: 0.1099

The information below is about HL_7A0S_042

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9NKL|1|R1|C|1691
9NKL|1|R1|U|1692
9NKL|1|R1|U|1693
9NKL|1|R1|C|1694
9NKL|1|R1|G|1695
9NKL|1|R1|G|1696

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA