HL_9NKL_048

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9NKL|1|R1|A|2030, 9NKL|1|R1|A|2031, 9NKL|1|R1|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_048 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.1106

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9NKL|1|R1|G|2027
9NKL|1|R1|U|2028
9NKL|1|R1|G|2029
9NKL|1|R1|A|2030
9NKL|1|R1|A|2031
9NKL|1|R1|G|2032
9NKL|1|R1|A|2033
9NKL|1|R1|U|2034
9NKL|1|R1|G|2035
9NKL|1|R1|C|2036

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 21

Large ribosomal subunit protein bL21

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32