3D structure

PDB id
9NKL (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUGAAGAUGC
Length
10 nucleotides
Bulged bases
9NKL|1|R1|A|2030, 9NKL|1|R1|A|2031, 9NKL|1|R1|G|2032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NKL_048 not in the Motif Atlas
Homologous match to HL_5J7L_183
Geometric discrepancy: 0.1106
The information below is about HL_5J7L_183
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_61996.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
7

Unit IDs

9NKL|1|R1|G|2027
9NKL|1|R1|U|2028
9NKL|1|R1|G|2029
9NKL|1|R1|A|2030
9NKL|1|R1|A|2031
9NKL|1|R1|G|2032
9NKL|1|R1|A|2033
9NKL|1|R1|U|2034
9NKL|1|R1|G|2035
9NKL|1|R1|C|2036

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 21
Large ribosomal subunit protein bL21
Chain 3
50S ribosomal protein L3
Chain 32
50S ribosomal protein L32

Coloring options:


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