HL_9NKL_067

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_067 not in the Motif Atlas

Homologous match to HL_7A0S_068

Geometric discrepancy: 0.0786

The information below is about HL_7A0S_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9NKL|1|R1|A|2856
9NKL|1|R1|G|2857
9NKL|1|R1|C|2858
9NKL|1|R1|G|2859
9NKL|1|R1|A|2860
9NKL|1|R1|U|2861

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L19

Chain R3

Small subunit ribosomal RNA; SSU rRNA