HL_9NKL_068
3D structure
- PDB id
- 9NKL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 9NKL|1|R2|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NKL_068 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.235
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9NKL|1|R2|A|34
9NKL|1|R2|C|35
9NKL|1|R2|C|36
9NKL|1|R2|C|37
9NKL|1|R2|C|38
9NKL|1|R2|A|39
9NKL|1|R2|U|40
9NKL|1|R2|G|41
9NKL|1|R2|C|42
9NKL|1|R2|C|43
9NKL|1|R2|G|44
9NKL|1|R2|A|45
9NKL|1|R2|A|46
9NKL|1|R2|C|47
9NKL|1|R2|U|48
Current chains
- Chain R2
- 5S ribosomal RNA
Nearby chains
- Chain 18
- Large ribosomal subunit protein uL18
- Chain 31
- Large ribosomal subunit protein bL31
- Chain 5
- 50S ribosomal protein L5
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
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