HL_9NL5_016

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9NL5|1|R1|A|613, 9NL5|1|R1|A|614, 9NL5|1|R1|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL5_016 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3001

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

9NL5|1|R1|C|611
9NL5|1|R1|G|612
9NL5|1|R1|A|613
9NL5|1|R1|A|614
9NL5|1|R1|U|615
9NL5|1|R1|A|616
9NL5|1|R1|G|617

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein uL4