HL_9NL5_023

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAGGGGGUCAUCCCGACUUACCAACC

Length

28 nucleotides

Bulged bases

9NL5|1|R1|C|885, 9NL5|1|R1|U|887, 9NL5|1|R1|G|891, 9NL5|1|R1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL5|1|R1|G|875
9NL5|1|R1|C|876
9NL5|1|R1|A|877
9NL5|1|R1|A|878
9NL5|1|R1|G|879
9NL5|1|R1|G|880
9NL5|1|R1|G|881
9NL5|1|R1|G|882
9NL5|1|R1|G|883
9NL5|1|R1|U|884
9NL5|1|R1|C|885
9NL5|1|R1|A|886
9NL5|1|R1|U|887
9NL5|1|R1|C|888
9NL5|1|R1|C|889
9NL5|1|R1|C|890
9NL5|1|R1|G|891
9NL5|1|R1|A|892
9NL5|1|R1|C|893
9NL5|1|R1|U|894
9NL5|1|R1|U|895
9NL5|1|R1|A|896
9NL5|1|R1|C|897
9NL5|1|R1|C|898
9NL5|1|R1|A|899
9NL5|1|R1|A|900
9NL5|1|R1|C|901
9NL5|1|R1|C|902

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain sm

Small ribosomal subunit protein uS13

Chain ss

30S ribosomal protein S19