HL_9NL5_053

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL5_053 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.2467

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9NL5|1|R1|G|2304
9NL5|1|R1|U|2305
9NL5|1|R1|C|2306
9NL5|1|R1|G|2307
9NL5|1|R1|G|2308
9NL5|1|R1|A|2309
9NL5|1|R1|C|2310
9NL5|1|R1|A|2311
9NL5|1|R1|U|2312

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L5