HL_9NL5_078

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9NL5|1|R3|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL5_078 not in the Motif Atlas

Homologous match to HL_5J7L_009

Geometric discrepancy: 0.1087

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9NL5|1|R3|C|342
9NL5|1|R3|U|343
9NL5|1|R3|A|344
9NL5|1|R3|C|345
9NL5|1|R3|G|346
9NL5|1|R3|G|347

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 19

50S ribosomal protein L19