HL_9NL5_098

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL5_098 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0781

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9NL5|1|R3|C|1314
9NL5|1|R3|U|1315
9NL5|1|R3|G|1316
9NL5|1|R3|C|1317
9NL5|1|R3|A|1318
9NL5|1|R3|A|1319
9NL5|1|R3|C|1320
9NL5|1|R3|U|1321
9NL5|1|R3|C|1322
9NL5|1|R3|G|1323

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sm

Small ribosomal subunit protein uS13

Chain sn

Small ribosomal subunit protein uS14

Chain ss

30S ribosomal protein S19