HL_9NL5_102
3D structure
- PDB id
- 9NL5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAGCUGGGAG
- Length
- 10 nucleotides
- Bulged bases
- 9NL5|1|T|C|16, 9NL5|1|T|U|17, 9NL5|1|T|G|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NL5_102 not in the Motif Atlas
- Homologous match to HL_7EQJ_004
- Geometric discrepancy: 0.1093
- The information below is about HL_7EQJ_004
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9NL5|1|T|C|13
9NL5|1|T|A|14
9NL5|1|T|G|15
9NL5|1|T|C|16
9NL5|1|T|U|17
9NL5|1|T|G|18
9NL5|1|T|G|19
9NL5|1|T|G|20
9NL5|1|T|A|21
9NL5|1|T|G|22
Current chains
- Chain T
- tRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L5
- Chain E
- EttA
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
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