HL_9NL6_024

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

9NL6|1|R1|U|887, 9NL6|1|R1|G|891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL6_024 not in the Motif Atlas

Homologous match to HL_5J7L_158

Geometric discrepancy: 0.5226

The information below is about HL_5J7L_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL6|1|R1|U|884
9NL6|1|R1|C|885
9NL6|1|R1|A|886
9NL6|1|R1|U|887
9NL6|1|R1|C|888
9NL6|1|R1|C|889
9NL6|1|R1|C|890
9NL6|1|R1|G|891
9NL6|1|R1|A|892

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain sm

30S ribosomal protein S13