HL_9NL6_048

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9NL6|1|R1|A|2030, 9NL6|1|R1|A|2031, 9NL6|1|R1|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL6_048 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0874

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9NL6|1|R1|G|2027
9NL6|1|R1|U|2028
9NL6|1|R1|G|2029
9NL6|1|R1|A|2030
9NL6|1|R1|A|2031
9NL6|1|R1|G|2032
9NL6|1|R1|A|2033
9NL6|1|R1|U|2034
9NL6|1|R1|G|2035
9NL6|1|R1|C|2036

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 21

Large ribosomal subunit protein bL21

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32