HL_9NL6_051

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9NL6|1|R1|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL6_051 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.162

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9NL6|1|R1|C|2248
9NL6|1|R1|U|2249
9NL6|1|R1|G|2250
9NL6|1|R1|G|2251
9NL6|1|R1|G|2252
9NL6|1|R1|G|2253
9NL6|1|R1|C|2254
9NL6|1|R1|G|2255
9NL6|1|R1|G|2256

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain 27

50S ribosomal protein L27

Chain T

Transfer RNA; tRNA

Chain Y

Probable ATP-binding protein YbiT