HL_9NL6_066

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9NL6|1|R1|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL6_066 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0935

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9NL6|1|R1|G|2819
9NL6|1|R1|A|2820
9NL6|1|R1|A|2821
9NL6|1|R1|G|2822
9NL6|1|R1|A|2823
9NL6|1|R1|C|2824
9NL6|1|R1|G|2825
9NL6|1|R1|A|2826
9NL6|1|R1|C|2827

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17

Chain 3

50S ribosomal protein L3