HL_9NL6_080

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCCUUCGGGU

Length

11 nucleotides

Bulged bases

9NL6|1|R3|U|421, 9NL6|1|R3|C|422, 9NL6|1|R3|G|423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL6|1|R3|G|416
9NL6|1|R3|G|417
9NL6|1|R3|C|418
9NL6|1|R3|C|419
9NL6|1|R3|U|420
9NL6|1|R3|U|421
9NL6|1|R3|C|422
9NL6|1|R3|G|423
9NL6|1|R3|G|424
9NL6|1|R3|G|425
9NL6|1|R3|U|426

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sc

Small ribosomal subunit protein uS3

Chain sd

30S ribosomal protein S4