HL_9NL6_081

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9NL6|1|R3|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL6_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2747

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9NL6|1|R3|G|462
9NL6|1|R3|U|463
9NL6|1|R3|U|464
9NL6|1|R3|A|465
9NL6|1|R3|A|466
9NL6|1|R3|U|467
9NL6|1|R3|A|468
9NL6|1|R3|C|469
9NL6|1|R3|C|470

Current chains

Chain R3

16S ribosomal RNA

Nearby chains