HL_9NL6_102
3D structure
- PDB id
- 9NL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 9NL6|1|T|U|17, 9NL6|1|T|G|18, 9NL6|1|T|G|19, 9NL6|1|T|H2U|20, 9NL6|1|T|A|21
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NL6_102 not in the Motif Atlas
- Homologous match to HL_7EQJ_004
- Geometric discrepancy: 0.1151
- The information below is about HL_7EQJ_004
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
9NL6|1|T|C|12
9NL6|1|T|A|13
9NL6|1|T|G|14
9NL6|1|T|C|15
9NL6|1|T|C|16
9NL6|1|T|U|17
9NL6|1|T|G|18
9NL6|1|T|G|19
9NL6|1|T|H2U|20
9NL6|1|T|A|21
9NL6|1|T|G|22
Current chains
- Chain T
- tRNA
Nearby chains
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- Probable ATP-binding protein YbiT
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