3D structure

PDB id
9NL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UGAAAGG
Length
7 nucleotides
Bulged bases
9NL7|1|R1|A|781, 9NL7|1|R1|G|784
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NL7_022 not in the Motif Atlas
Homologous match to HL_5J7L_156
Geometric discrepancy: 0.1485
The information below is about HL_5J7L_156
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87954.2
Basepair signature
cWW-tSW-F
Number of instances in this motif group
7

Unit IDs

9NL7|1|R1|U|779
9NL7|1|R1|G|780
9NL7|1|R1|A|781
9NL7|1|R1|A|782
9NL7|1|R1|A|783
9NL7|1|R1|G|784
9NL7|1|R1|G|785

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L2

Coloring options:


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