3D structure

PDB id
9NL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UGAAGAAGGCCUUCGGGUUGUAAAG
Length
25 nucleotides
Bulged bases
9NL7|1|R3|C|422
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9NL7|1|R3|U|409
9NL7|1|R3|G|410
9NL7|1|R3|A|411
9NL7|1|R3|A|412
9NL7|1|R3|G|413
9NL7|1|R3|A|414
9NL7|1|R3|A|415
9NL7|1|R3|G|416
9NL7|1|R3|G|417
9NL7|1|R3|C|418
9NL7|1|R3|C|419
9NL7|1|R3|U|420
9NL7|1|R3|U|421
9NL7|1|R3|C|422
9NL7|1|R3|G|423
9NL7|1|R3|G|424
9NL7|1|R3|G|425
9NL7|1|R3|U|426
9NL7|1|R3|U|427
9NL7|1|R3|G|428
9NL7|1|R3|U|429
9NL7|1|R3|A|430
9NL7|1|R3|A|431
9NL7|1|R3|A|432
9NL7|1|R3|G|433

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain sc
Small ribosomal subunit protein uS3
Chain sd
30S ribosomal protein S4

Coloring options:

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