HL_9NL7_095

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9NL7|1|R3|C|1136, 9NL7|1|R3|C|1137, 9NL7|1|R3|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL7_095 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.264

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL7|1|R3|G|1134
9NL7|1|R3|U|1135
9NL7|1|R3|C|1136
9NL7|1|R3|C|1137
9NL7|1|R3|G|1138
9NL7|1|R3|G|1139
9NL7|1|R3|C|1140

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain si

Small ribosomal subunit protein uS9