HL_9NL7_098

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL7_098 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.2389

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9NL7|1|R3|C|1314
9NL7|1|R3|U|1315
9NL7|1|R3|G|1316
9NL7|1|R3|C|1317
9NL7|1|R3|A|1318
9NL7|1|R3|A|1319
9NL7|1|R3|C|1320
9NL7|1|R3|U|1321
9NL7|1|R3|C|1322
9NL7|1|R3|G|1323

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sm

30S ribosomal protein S13

Chain sn

Small ribosomal subunit protein uS14

Chain ss

Small ribosomal subunit protein uS19