HL_9NLE_104
3D structure
- PDB id
- 9NLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- G(MUM)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: MUM, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NLE_104 not in the Motif Atlas
- Homologous match to HL_4YYE_003
- Geometric discrepancy: 0.2413
- The information below is about HL_4YYE_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
9NLE|1|T|G|53
9NLE|1|T|MUM|54
9NLE|1|T|PSU|55
9NLE|1|T|C|56
9NLE|1|T|A|57
9NLE|1|T|A|58
9NLE|1|T|A|59
9NLE|1|T|U|60
9NLE|1|T|C|61
Current chains
- Chain T
- tRNA
Nearby chains
- Chain 16
- 50S ribosomal protein L16
- Chain 5
- 50S ribosomal protein L5
- Chain E
- Energy-dependent translational throttle protein EttA
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: