HL_9NLF_015

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

9NLF|1|R1|U|546, 9NLF|1|R1|A|547, 9NLF|1|R1|G|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLF_015 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2627

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9NLF|1|R1|C|544
9NLF|1|R1|U|545
9NLF|1|R1|U|546
9NLF|1|R1|A|547
9NLF|1|R1|G|548
9NLF|1|R1|G|549

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 21

Large ribosomal subunit protein bL21