HL_9NLF_027

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUGUUGGCUUAGAAGCAGCCAUCAUU

Length

26 nucleotides

Bulged bases

9NLF|1|R1|U|1060, 9NLF|1|R1|U|1061, 9NLF|1|R1|U|1065, 9NLF|1|R1|U|1066, 9NLF|1|R1|A|1070, 9NLF|1|R1|A|1073, 9NLF|1|R1|G|1074, 9NLF|1|R1|C|1079

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLF|1|R1|A|1057
9NLF|1|R1|U|1058
9NLF|1|R1|G|1059
9NLF|1|R1|U|1060
9NLF|1|R1|U|1061
9NLF|1|R1|G|1062
9NLF|1|R1|G|1063
9NLF|1|R1|C|1064
9NLF|1|R1|U|1065
9NLF|1|R1|U|1066
9NLF|1|R1|A|1067
9NLF|1|R1|G|1068
9NLF|1|R1|A|1069
9NLF|1|R1|A|1070
9NLF|1|R1|G|1071
9NLF|1|R1|C|1072
9NLF|1|R1|A|1073
9NLF|1|R1|G|1074
9NLF|1|R1|C|1075
9NLF|1|R1|C|1076
9NLF|1|R1|A|1077
9NLF|1|R1|U|1078
9NLF|1|R1|C|1079
9NLF|1|R1|A|1080
9NLF|1|R1|U|1081
9NLF|1|R1|U|1082

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16