HL_9NLF_067

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9NLF|1|R1|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLF_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1077

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9NLF|1|R1|G|2819
9NLF|1|R1|A|2820
9NLF|1|R1|A|2821
9NLF|1|R1|G|2822
9NLF|1|R1|A|2823
9NLF|1|R1|C|2824
9NLF|1|R1|G|2825
9NLF|1|R1|A|2826
9NLF|1|R1|C|2827

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17

Chain 3

50S ribosomal protein L3