HL_9NLF_076

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

9NLF|1|R3|U|208, 9NLF|1|R3|U|209, 9NLF|1|R3|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLF_076 not in the Motif Atlas

Homologous match to HL_4LFB_005

Geometric discrepancy: 0.3649

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9NLF|1|R3|C|206
9NLF|1|R3|C|207
9NLF|1|R3|U|208
9NLF|1|R3|U|209
9NLF|1|R3|C|210
9NLF|1|R3|G|211
9NLF|1|R3|G|212
9NLF|1|R3|G|213

Current chains

Chain R3

16S ribosomal RNA

Nearby chains