HL_9NLF_082

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAGAAGGCCUUCGGGUUGUAAAG

Length

25 nucleotides

Bulged bases

9NLF|1|R3|U|421, 9NLF|1|R3|C|422, 9NLF|1|R3|G|423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLF|1|R3|U|409
9NLF|1|R3|G|410
9NLF|1|R3|A|411
9NLF|1|R3|A|412
9NLF|1|R3|G|413
9NLF|1|R3|A|414
9NLF|1|R3|A|415
9NLF|1|R3|G|416
9NLF|1|R3|G|417
9NLF|1|R3|C|418
9NLF|1|R3|C|419
9NLF|1|R3|U|420
9NLF|1|R3|U|421
9NLF|1|R3|C|422
9NLF|1|R3|G|423
9NLF|1|R3|G|424
9NLF|1|R3|G|425
9NLF|1|R3|U|426
9NLF|1|R3|U|427
9NLF|1|R3|G|428
9NLF|1|R3|U|429
9NLF|1|R3|A|430
9NLF|1|R3|A|431
9NLF|1|R3|A|432
9NLF|1|R3|G|433

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sc

Small ribosomal subunit protein uS3

Chain sd

30S ribosomal protein S4