HL_9NLF_083

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9NLF|1|R3|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLF_083 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3207

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9NLF|1|R3|G|462
9NLF|1|R3|U|463
9NLF|1|R3|U|464
9NLF|1|R3|A|465
9NLF|1|R3|A|466
9NLF|1|R3|U|467
9NLF|1|R3|A|468
9NLF|1|R3|C|469
9NLF|1|R3|C|470

Current chains

Chain R3

16S ribosomal RNA

Nearby chains