HL_9NLF_102

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9NLF|1|R3|U|1451, 9NLF|1|R3|C|1452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLF_102 not in the Motif Atlas

Geometric match to HL_8CRE_195

Geometric discrepancy: 0.3327

The information below is about HL_8CRE_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.3

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

9NLF|1|R3|C|1449
9NLF|1|R3|U|1450
9NLF|1|R3|U|1451
9NLF|1|R3|C|1452
9NLF|1|R3|G|1453
9NLF|1|R3|G|1454

Current chains

Chain R3

16S ribosomal RNA

Nearby chains