3D structure

PDB id
9NLH (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli Initiation complex with YheS-EQ2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUAACG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NLH_088 not in the Motif Atlas
Homologous match to HL_4LFB_019
Geometric discrepancy: 0.0977
The information below is about HL_4LFB_019
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

9NLH|1|R3|C|862
9NLH|1|R3|U|863
9NLH|1|R3|A|864
9NLH|1|R3|A|865
9NLH|1|R3|C|866
9NLH|1|R3|G|867

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain se
Small ribosomal subunit protein uS5

Coloring options:


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