HL_9NLH_095

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

9NLH|1|R3|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLH_095 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.4165

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9NLH|1|R3|U|1165
9NLH|1|R3|G|1166
9NLH|1|R3|A|1167
9NLH|1|R3|U|1168
9NLH|1|R3|A|1169
9NLH|1|R3|A|1170
9NLH|1|R3|A|1171

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain su

Small ribosomal subunit protein bS21