HL_9NLJ_004

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUGAAUCCAUAGGU

Length

16 nucleotides

Bulged bases

9NLJ|1|R1|C|163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R1|A|155
9NLJ|1|R1|A|156
9NLJ|1|R1|C|157
9NLJ|1|R1|U|158
9NLJ|1|R1|G|159
9NLJ|1|R1|A|160
9NLJ|1|R1|A|161
9NLJ|1|R1|U|162
9NLJ|1|R1|C|163
9NLJ|1|R1|C|164
9NLJ|1|R1|A|165
9NLJ|1|R1|U|166
9NLJ|1|R1|A|167
9NLJ|1|R1|G|168
9NLJ|1|R1|G|169
9NLJ|1|R1|U|170

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28